BLASTP 2.7.1+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: GCF_000001405.40_GRCh38.p14_protein.faa 136,193 sequences; 94,334,868 total letters Query= RXR98614.1 Length=1154 Score E Sequences producing significant alignments: (Bits) Value XP_016856418.1 collagen alpha-1(XXIV) chain isoform X9 [Homo sa... 49.3 1e-04 XP_016856417.1 collagen alpha-1(XXIV) chain isoform X8 [Homo sa... 49.3 1e-04 XP_047297775.1 collagen alpha-6(IV) chain isoform X10 [Homo sap... 42.0 0.017 XP_047297774.1 collagen alpha-6(IV) chain isoform X9 [Homo sapi... 42.0 0.021 > XP_016856418.1 collagen alpha-1(XXIV) chain isoform X9 [Homo sapiens] Length=957 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 183/524 (35%), Positives = 211/524 (40%), Gaps = 86/524 (16%) Query 166 SGGNGGKGGNGADAT-----VAGANGGKGGAGGNG--GLVGDGGAGGDGG-SGAAGANGA 217 G G +G G D + GA G KG G G GL+G G G+ G G G G Sbjct 163 QGPKGQRGSRGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQGL 222 Query 218 --NVGEDGADGTLSGQPGEGSEANGGQGGVGGGGAGGAGGDGGA-GSSALGSGGNGGRGD 274 + G+ G L G+PG G QG VG G G G G G S L G G +GD Sbjct 223 PGSTGDRG----LPGEPG----LRGLQGDVGPPGEMGMEGPPGTEGESGL-QGEPGAKGD 273 Query 275 AGQAGGAGGAGGAGGAGGSVSGDGGPGGKGGAGGAGGAGASGGGGGKGASGADSAE---- 330 G AG GG G G G PG G G G G G GG+G G D + Sbjct 274 VGTAGSVGGTGEPGLR-------GEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKGEMG 326 Query 331 ---AVGGAGG------KGGDGGVGGVGGDGGPGGDGGAGGAAPAGQVGSHGVGGVGGDGG 381 +G G G +G VG G G PG G G P G+VGS G G G G Sbjct 327 LPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIGKSG 386 Query 382 LGGAGGNGGDGGHGSDGGDGGDGGDPGAGGLGGLGGDSGNGTRAASGVDASDHGPGSGGN 441 GA G G GH G G G+PG G G G G SG+ PG G Sbjct 387 PKGARGTRGAVGH---LGLMGPDGEPGIPGYRGHQGQPG-----PSGL------PGPKGE 432 Query 442 GGNGGNGAQASVAGGAGGNGGDGGNAGRVGDGGAGGNGGD-GAAGANGA--NSGAPGSDA 498 G G + G G G G+ G G+ GA G G G G GA G P Sbjct 433 KGYPGEDSTVLGPPGPRGEPGPVGDQGERGEPGAEGYKGHVGVPGLRGATGQQGPP---- 488 Query 499 LALGQPGGNGGQGDAGQAGGAGGAGGAGGAGGSVSGDGGAGGNGGAGGNGGVGASGGAGA 558 G+PG G QG G+ G G G G G S G G G G +G G G Sbjct 489 ---GEPGDQGEQGLKGERGSEGNKGKKGAPGPS-------GKPGIPGLQGLLGPKGIQGY 538 Query 559 RGANGID----SIGGTGGAGGGGGDGGAG--GVGGHGGDGGVGGAAPSGTVGSHGTGGVG 612 GA+GI IG G G G GG G G+ G G GV G+ SG GS G G Sbjct 539 HGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGS--SGLPGSPGIQGPK 596 Query 613 GDGGLGGAGGVGGAGGNGGIGITVGGAGGAGGNGGDPGAGGRGG 656 G+ GL G G+ G G+ GA G G GDPG G+ G Sbjct 597 GEQGLPGQPGIQGKRGH-------RGAQGDQGPCGDPGLKGQPG 633 > XP_016856417.1 collagen alpha-1(XXIV) chain isoform X8 [Homo sapiens] Length=972 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 183/524 (35%), Positives = 211/524 (40%), Gaps = 86/524 (16%) Query 166 SGGNGGKGGNGADAT-----VAGANGGKGGAGGNG--GLVGDGGAGGDGG-SGAAGANGA 217 G G +G G D + GA G KG G G GL+G G G+ G G G G Sbjct 178 QGPKGQRGSRGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQGL 237 Query 218 --NVGEDGADGTLSGQPGEGSEANGGQGGVGGGGAGGAGGDGGA-GSSALGSGGNGGRGD 274 + G+ G L G+PG G QG VG G G G G G S L G G +GD Sbjct 238 PGSTGDRG----LPGEPG----LRGLQGDVGPPGEMGMEGPPGTEGESGL-QGEPGAKGD 288 Query 275 AGQAGGAGGAGGAGGAGGSVSGDGGPGGKGGAGGAGGAGASGGGGGKGASGADSAE---- 330 G AG GG G G G PG G G G G G GG+G G D + Sbjct 289 VGTAGSVGGTGEPGLR-------GEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKGEMG 341 Query 331 ---AVGGAGG------KGGDGGVGGVGGDGGPGGDGGAGGAAPAGQVGSHGVGGVGGDGG 381 +G G G +G VG G G PG G G P G+VGS G G G G Sbjct 342 LPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIGKSG 401 Query 382 LGGAGGNGGDGGHGSDGGDGGDGGDPGAGGLGGLGGDSGNGTRAASGVDASDHGPGSGGN 441 GA G G GH G G G+PG G G G G SG+ PG G Sbjct 402 PKGARGTRGAVGH---LGLMGPDGEPGIPGYRGHQGQPG-----PSGL------PGPKGE 447 Query 442 GGNGGNGAQASVAGGAGGNGGDGGNAGRVGDGGAGGNGGD-GAAGANGA--NSGAPGSDA 498 G G + G G G G+ G G+ GA G G G G GA G P Sbjct 448 KGYPGEDSTVLGPPGPRGEPGPVGDQGERGEPGAEGYKGHVGVPGLRGATGQQGPP---- 503 Query 499 LALGQPGGNGGQGDAGQAGGAGGAGGAGGAGGSVSGDGGAGGNGGAGGNGGVGASGGAGA 558 G+PG G QG G+ G G G G G S G G G G +G G G Sbjct 504 ---GEPGDQGEQGLKGERGSEGNKGKKGAPGPS-------GKPGIPGLQGLLGPKGIQGY 553 Query 559 RGANGID----SIGGTGGAGGGGGDGGAG--GVGGHGGDGGVGGAAPSGTVGSHGTGGVG 612 GA+GI IG G G G GG G G+ G G GV G+ SG GS G G Sbjct 554 HGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGS--SGLPGSPGIQGPK 611 Query 613 GDGGLGGAGGVGGAGGNGGIGITVGGAGGAGGNGGDPGAGGRGG 656 G+ GL G G+ G G+ GA G G GDPG G+ G Sbjct 612 GEQGLPGQPGIQGKRGH-------RGAQGDQGPCGDPGLKGQPG 648 > XP_047297775.1 collagen alpha-6(IV) chain isoform X10 [Homo sapiens] Length=1224 Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust. Identities = 187/631 (30%), Positives = 225/631 (36%), Gaps = 139/631 (22%) Query 73 AGGRGGDGGAGGAGGDAPAGRAGSQGVGGDGGAGGAGGAPGNGGSGGRGDMA-FKDGDGG 131 G G G G G P G G G G G+ G+ G PG+ G ++ F G G Sbjct 659 PGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGF-PGPRG 717 Query 132 AGGDGGDPGAGGKGGAGGAGATEGVTGATGAT--VHSGGNGGKGGNGADATVAGANGGKG 189 G G PG GK G G + G+ G+ GAT + NG G G Sbjct 718 EKGLPGFPGLPGKDGLPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQ----------- 766 Query 190 GAGGNGGLVGDGGAGG-DGGSGAAGANGANVGEDGADGTLSGQPGEGSEANGGQGGVGGG 248 G G+ G +GD G G G G G G GE G+ GT Sbjct 767 GLTGHKGFLGDSGLPGLKGVHGKPGLLGPK-GERGSPGT--------------------- 804 Query 249 GAGGAGGDGGAGSSALGSGGNGGRGDAGQAGGAGGAGGAG-----------GAGGSVSGD 297 G G G GSS G G +G +G G G G +G G GS+ Sbjct 805 -PGQVGQPGTPGSS----GPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVKK 859 Query 298 GGPGGKGGAGGAGGAGASGGGGGKGASGADSAEAVGGAGGKGGDGGVGGVGGDGGPGGDG 357 G PG KG G G G G G G +G + +G KG G VG VG G PG Sbjct 860 GLPGLKGLPGNPGLVGLKGSPGSPGVAGLPAL-----SGPKGEKGSVGFVGFPGIPG--- 911 Query 358 GAGGAAPAGQVGSHGVGGVGGDGGLGGAGGNGGDGGHGSDGGDGGDGGDPGAGGLGGLGG 417 G+ G G G+ G+ G G G G+ GD G+PG G+ Sbjct 912 ------------LPGIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIP---- 955 Query 418 DSGNGTRAASGVDAS-DHGPGSGGNGGNGGNGAQ--------------------ASVAGG 456 + R S + D G G G NG G + + G Sbjct 956 ---SPRRPMSNLWLKGDKG-SQGSAGSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKG 1011 Query 457 AGGNGGDGGNAGRVGDGGAGGNGG-------DGAAGANGAN--SGAPGSDALALGQPGGN 507 G G G G G G G+ G G +G+ G G PG+ L Sbjct 1012 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLP------- 1064 Query 508 GGQGDAGQAGGAGGAGGAGGAGGS-----VSGDGGAGGNGGAGGNGG----VGASGGAGA 558 G +GD GQ G+ G G G G G GN G GN G VG SG G Sbjct 1065 GLKGDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGL 1124 Query 559 RGANGIDSIGGTGGAGGGGGDGG-AGGVGGHGGDGGVGGAAPSGTVGSHGTGGVGGDGGL 617 GA G + G G G G G G +G G G +G PS T GV G GL Sbjct 1125 PGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGPSIT-------GVPGPAGL 1177 Query 618 GGAGGVGGAGGNGGIGITVGGAGGAGGNGGD 648 G G G GIGI G G G GD Sbjct 1178 PGPKG---EKGYPGIGIGAPGKPGLRGQKGD 1205 > XP_047297774.1 collagen alpha-6(IV) chain isoform X9 [Homo sapiens] Length=1225 Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust. Identities = 187/631 (30%), Positives = 225/631 (36%), Gaps = 139/631 (22%) Query 73 AGGRGGDGGAGGAGGDAPAGRAGSQGVGGDGGAGGAGGAPGNGGSGGRGDMA-FKDGDGG 131 G G G G G P G G G G G+ G+ G PG+ G ++ F G G Sbjct 660 PGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGF-PGPRG 718 Query 132 AGGDGGDPGAGGKGGAGGAGATEGVTGATGAT--VHSGGNGGKGGNGADATVAGANGGKG 189 G G PG GK G G + G+ G+ GAT + NG G G Sbjct 719 EKGLPGFPGLPGKDGLPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQ----------- 767 Query 190 GAGGNGGLVGDGGAGG-DGGSGAAGANGANVGEDGADGTLSGQPGEGSEANGGQGGVGGG 248 G G+ G +GD G G G G G G GE G+ GT Sbjct 768 GLTGHKGFLGDSGLPGLKGVHGKPGLLGPK-GERGSPGT--------------------- 805 Query 249 GAGGAGGDGGAGSSALGSGGNGGRGDAGQAGGAGGAGGAG-----------GAGGSVSGD 297 G G G GSS G G +G +G G G G +G G GS+ Sbjct 806 -PGQVGQPGTPGSS----GPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVKK 860 Query 298 GGPGGKGGAGGAGGAGASGGGGGKGASGADSAEAVGGAGGKGGDGGVGGVGGDGGPGGDG 357 G PG KG G G G G G G +G + +G KG G VG VG G PG Sbjct 861 GLPGLKGLPGNPGLVGLKGSPGSPGVAGLPAL-----SGPKGEKGSVGFVGFPGIPG--- 912 Query 358 GAGGAAPAGQVGSHGVGGVGGDGGLGGAGGNGGDGGHGSDGGDGGDGGDPGAGGLGGLGG 417 G+ G G G+ G+ G G G G+ GD G+PG G+ Sbjct 913 ------------LPGIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIP---- 956 Query 418 DSGNGTRAASGVDAS-DHGPGSGGNGGNGGNGAQ--------------------ASVAGG 456 + R S + D G G G NG G + + G Sbjct 957 ---SPRRPMSNLWLKGDKG-SQGSAGSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKG 1012 Query 457 AGGNGGDGGNAGRVGDGGAGGNGG-------DGAAGANGAN--SGAPGSDALALGQPGGN 507 G G G G G G G+ G G +G+ G G PG+ L Sbjct 1013 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLP------- 1065 Query 508 GGQGDAGQAGGAGGAGGAGGAGGS-----VSGDGGAGGNGGAGGNGG----VGASGGAGA 558 G +GD GQ G+ G G G G G GN G GN G VG SG G Sbjct 1066 GLKGDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGL 1125 Query 559 RGANGIDSIGGTGGAGGGGGDGG-AGGVGGHGGDGGVGGAAPSGTVGSHGTGGVGGDGGL 617 GA G + G G G G G G +G G G +G PS T GV G GL Sbjct 1126 PGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGPSIT-------GVPGPAGL 1178 Query 618 GGAGGVGGAGGNGGIGITVGGAGGAGGNGGD 648 G G G GIGI G G G GD Sbjct 1179 PGPKG---EKGYPGIGIGAPGKPGLRGQKGD 1206 Lambda K H a alpha 0.304 0.145 0.452 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 79552754547 Database: GCF_000001405.40_GRCh38.p14_protein.faa Posted date: Apr 24, 2023 10:59 AM Number of letters in database: 94,334,868 Number of sequences in database: 136,193 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40