BLASTP 2.7.1+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: GCF_000001405.40_GRCh38.p14_protein.faa 136,193 sequences; 94,334,868 total letters Query= KBV12939.1 Length=1295 Score E Sequences producing significant alignments: (Bits) Value XP_016856418.1 collagen alpha-1(XXIV) chain isoform X9 [Homo sa... 49.3 1e-04 NP_001336884.1 collagen alpha-1(XXIV) chain isoform 2 [Homo sap... 44.7 0.003 XP_016856417.1 collagen alpha-1(XXIV) chain isoform X8 [Homo sa... 44.3 0.005 > XP_016856418.1 collagen alpha-1(XXIV) chain isoform X9 [Homo sapiens] Length=957 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 182/521 (35%), Positives = 211/521 (40%), Gaps = 83/521 (16%) Query 310 SGGNGGKGGNGADAT-----VAGANGGKGGAGGNG--GLVGDGGAGGDGG-SGAAGANGA 361 G G +G G D + GA G KG G G GL+G G G+ G G G G Sbjct 163 QGPKGQRGSRGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQGL 222 Query 362 --NVGEDGADGTLSGQPGEGSEANGGQGGVGGGGAGGAGGDGGA-GSSALGSGGNGGRGD 418 + G+ G L G+PG G QG VG G G G G G S L G G +GD Sbjct 223 PGSTGDRG----LPGEPG----LRGLQGDVGPPGEMGMEGPPGTEGESGL-QGEPGAKGD 273 Query 419 AGQAGGAGGAGGAGGAGGSVSGDGGPGGKGGAGGAGGAGASGGGGGKGASGADSAE---- 474 G AG GG G G G PG G G G G G GG+G G D + Sbjct 274 VGTAGSVGGTGEPGLR-------GEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKGEMG 326 Query 475 ---AVGGAGG------KGGDGGVGGVGGDGGPGGDGGAGGAAPAGQVGSHGVGGVGGDGG 525 +G G G +G VG G G PG G G P G+VGS G G G G Sbjct 327 LPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIGKSG 386 Query 526 LGGAGGNGGDGGHGSDGGDGGDGGDPGAGGLGGLGGDSGNGTRAASGVDASDHGPGSGGN 585 GA G G GH G G G+PG G G G G SG+ PG G Sbjct 387 PKGARGTRGAVGH---LGLMGPDGEPGIPGYRGHQGQPG-----PSGL------PGPKGE 432 Query 586 GGNGGNGAQASVAGGAGGNGGDGGNAGRVGDGGAGGNGGD-GAAGANGA--NSGAPGSDA 642 G G + G G G G+ G G+ GA G G G G GA G P Sbjct 433 KGYPGEDSTVLGPPGPRGEPGPVGDQGERGEPGAEGYKGHVGVPGLRGATGQQGPP---- 488 Query 643 LALGQPGGNGGQGDAGQAGGAGGAGGAGGSVSGDGGAGGNGGAGGNGGVGASGGAGARGA 702 G+PG G QG G+ G G G G G +G G G G +G G G GA Sbjct 489 ---GEPGDQGEQGLKGERGSEGNKGKKGAP----GPSGKPGIPGLQGLLGPKGIQGYHGA 541 Query 703 NGID----SIGGTGGAGGGGGDGGAG--GVGGHGGDGGVGGAAPSGTVGSHGTGGVGGDG 756 +GI IG G G G GG G G+ G G GV G+ SG GS G G G+ Sbjct 542 DGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGS--SGLPGSPGIQGPKGEQ 599 Query 757 GLGGAGGVGGAGGNGGIGITVGGAGGAGGNGGDPGAGGRGG 797 GL G G+ G G+ GA G G GDPG G+ G Sbjct 600 GLPGQPGIQGKRGH-------RGAQGDQGPCGDPGLKGQPG 633 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 240/727 (33%), Positives = 266/727 (37%), Gaps = 167/727 (23%) Query 414 GGRGDAGQAGGAGGAGGAGGAGGSVSGDGGPGGK----GGAGGAGGAGASGGGGGKGASG 469 G RG GQ G AG G G G GD G GK G G G G +G G KG G Sbjct 62 GPRGKPGQKGYAGEPGPEGLKGEV--GDQGNIGKIGETGPVGLPGEVGMTGSIGEKGERG 119 Query 470 ADSAEAVGGAGGKGGDGGV-------------------GGVGGDGGPGGDGGAGGAAPAG 510 + G G G+ GV G VG G PG G P G Sbjct 120 SP------GPLGPQGEKGVMGYPGPPGVPGPIGPLGLPGHVGARGPPGSQG------PKG 167 Query 511 QVGSHGVGGVGGDGGLGGAGGNGGDGG----HGSDG-----GDGGDGGDPGAGGLGGLGG 561 Q GS G G+ G+ G+ GA G GD G HG G G+ G G PG GL G G Sbjct 168 QRGSRGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQGLPGSTG 227 Query 562 DSG----NGTRAASGVDASDHGPG-----SGGNGGNGGNGAQASVAGGAGGNGGDGGNAG 612 D G G R G D GP G G G +G Q G G GD G AG Sbjct 228 DRGLPGEPGLRGLQG----DVGPPGEMGMEGPPGTEGESGLQ-----GEPGAKGDVGTAG 278 Query 613 RVG-DGGAGGNGGDGAAGANGAN-----------SGAPGSDALA--LGQPGGNGGQGDAG 658 VG G G G GA G G G PG D +G PG G G +G Sbjct 279 SVGGTGEPGLRGEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKGEMGLPGIIGPLGRSG 338 Query 659 QAGGAGGAGGAGGSVSGDGGAGGNGGAGGNGGVGASGGAGARGANGIDSIGGTGGAGGGG 718 Q G G G G G G G G G +G +G G+RG G IG +G G G Sbjct 339 QTGLPGPEGIVGIP----GQRGRPGKKGDKGQIGPTGEVGSRGPPG--KIGKSGPKGARG 392 Query 719 GDGGAGGVGGHGGDGGVGGAAPSGTVGSHGTGGVGGDGGLGGAGGVGGAGGNGGIGITVG 778 G G +G G DG G G G G G GL G G G G + Sbjct 393 TRGAVGHLGLMGPDGE------PGIPGYRGHQGQPGPSGLPGPKGEKGYPGEDSTVLGPP 446 Query 779 GAGGAGGNGGDPGAGGRGGLGGDSGNGTSAANGVDASKHGPLTGGDGGVGGNGAKAAA-A 837 G G G GD G RG G + G G VG G + A Sbjct 447 GPRGEPGPVGD--QGERGEPGAE--------------------GYKGHVGVPGLRGATGQ 484 Query 838 GGDGGQGGDGGNAGLFGDGGAGGDGADGTAAEALGGDGGAGGAGGKGGDAGDIGDGGDGG 897 G G+ GD G GL G+ G+ G+ G GA G GK G G G G Sbjct 485 QGPPGEPGDQGEQGLKGERGSEGNK----------GKKGAPGPSGKPGIPG--LQGLLGP 532 Query 898 KGGDGAHGA-----------------LGGLTVAGGNGGAGGAGGAGGAGGAFLGDGGNGG 940 KG G HGA L G+ G G GA G G G+ G G Sbjct 533 KGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGS---SGLPGS 589 Query 941 AGGQGGAGRGGSPGGGG--GVGGHGGAGGDAGMNGGGGTGGQGGNGAAGGAGWSPDSDLK 998 G QG G G PG G G GH GA GD G G G GQ G G L Sbjct 590 PGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKGQPGEYGVQG--------LT 641 Query 999 GFDGFDGGSGGAGGDGGAGGAGGTQTGDGGDGGAGGLGGAGGVGGNGVDGFDINETTGRD 1058 GF GF G G GD G G G + G G G LG G +G TGR Sbjct 642 GFQGFPG-PKGPEGDAGIVGISGPKGPIGHRGNTGPLGREGIIG-----------PTGRT 689 Query 1059 GGDGGDG 1065 G G G Sbjct 690 GPRGEKG 696 > NP_001336884.1 collagen alpha-1(XXIV) chain isoform 2 [Homo sapiens] Length=1014 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 241/727 (33%), Positives = 267/727 (37%), Gaps = 167/727 (23%) Query 414 GGRGDAGQAGGAGGAGGAGGAGGSVSGDGGPGGK----GGAGGAGGAGASGGGGGKGASG 469 G RG GQ G AG G G G V GD G GK G G G G +G G KG G Sbjct 119 GPRGKPGQKGYAGEPG-PEGLKGEV-GDQGNIGKIGETGPVGLPGEVGMTGSIGEKGERG 176 Query 470 ADSAEAVGGAGGKGGDGGV-------------------GGVGGDGGPGGDGGAGGAAPAG 510 + G G G+ GV G VG G PG G P G Sbjct 177 SP------GPLGPQGEKGVMGYPGPPGVPGPIGPLGLPGHVGARGPPGSQG------PKG 224 Query 511 QVGSHGVGGVGGDGGLGGAGGNGGDGG----HGSDG-----GDGGDGGDPGAGGLGGLGG 561 Q GS G G+ G+ G+ GA G GD G HG G G+ G G PG GL G G Sbjct 225 QRGSRGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQGLPGSTG 284 Query 562 DSG----NGTRAASGVDASDHGPG-----SGGNGGNGGNGAQASVAGGAGGNGGDGGNAG 612 D G G R G D GP G G G +G Q G G GD G AG Sbjct 285 DRGLPGEPGLRGLQG----DVGPPGEMGMEGPPGTEGESGLQ-----GEPGAKGDVGTAG 335 Query 613 RVG-DGGAGGNGGDGAAGANGAN-----------SGAPGSDALA--LGQPGGNGGQGDAG 658 VG G G G GA G G G PG D +G PG G G +G Sbjct 336 SVGGTGEPGLRGEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKGEMGLPGIIGPLGRSG 395 Query 659 QAGGAGGAGGAGGSVSGDGGAGGNGGAGGNGGVGASGGAGARGANGIDSIGGTGGAGGGG 718 Q G G G G G G G G G +G +G G+RG G IG +G G G Sbjct 396 QTGLPGPEGIVGIP----GQRGRPGKKGDKGQIGPTGEVGSRGPPG--KIGKSGPKGARG 449 Query 719 GDGGAGGVGGHGGDGGVGGAAPSGTVGSHGTGGVGGDGGLGGAGGVGGAGGNGGIGITVG 778 G G +G G DG G G G G G GL G G G G + Sbjct 450 TRGAVGHLGLMGPDGE------PGIPGYRGHQGQPGPSGLPGPKGEKGYPGEDSTVLGPP 503 Query 779 GAGGAGGNGGDPGAGGRGGLGGDSGNGTSAANGVDASKHGPLTGGDGGVGGNGAKAAA-A 837 G G G GD G RG G + G G VG G + A Sbjct 504 GPRGEPGPVGD--QGERGEPGAE--------------------GYKGHVGVPGLRGATGQ 541 Query 838 GGDGGQGGDGGNAGLFGDGGAGGDGADGTAAEALGGDGGAGGAGGKGGDAGDIGDGGDGG 897 G G+ GD G GL G+ G+ G+ G GA G GK G G G G Sbjct 542 QGPPGEPGDQGEQGLKGERGSEGNK----------GKKGAPGPSGKPGIPG--LQGLLGP 589 Query 898 KGGDGAHGA-----------------LGGLTVAGGNGGAGGAGGAGGAGGAFLGDGGNGG 940 KG G HGA L G+ G G GA G G G+ G G Sbjct 590 KGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGS---SGLPGS 646 Query 941 AGGQGGAGRGGSPGGGG--GVGGHGGAGGDAGMNGGGGTGGQGGNGAAGGAGWSPDSDLK 998 G QG G G PG G G GH GA GD G G G GQ G G L Sbjct 647 PGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKGQPGEYGVQG--------LT 698 Query 999 GFDGFDGGSGGAGGDGGAGGAGGTQTGDGGDGGAGGLGGAGGVGGNGVDGFDINETTGRD 1058 GF GF G G GD G G G + G G G LG G +G TGR Sbjct 699 GFQGFPGPKG-PEGDAGIVGISGPKGPIGHRGNTGPLGREGIIG-----------PTGRT 746 Query 1059 GGDGGDG 1065 G G G Sbjct 747 GPRGEKG 753 > XP_016856417.1 collagen alpha-1(XXIV) chain isoform X8 [Homo sapiens] Length=972 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 240/727 (33%), Positives = 266/727 (37%), Gaps = 167/727 (23%) Query 414 GGRGDAGQAGGAGGAGGAGGAGGSVSGDGGPGGK----GGAGGAGGAGASGGGGGKGASG 469 G RG GQ G AG G G G GD G GK G G G G +G G KG G Sbjct 77 GPRGKPGQKGYAGEPGPEGLKGEV--GDQGNIGKIGETGPVGLPGEVGMTGSIGEKGERG 134 Query 470 ADSAEAVGGAGGKGGDGGV-------------------GGVGGDGGPGGDGGAGGAAPAG 510 + G G G+ GV G VG G PG G P G Sbjct 135 SP------GPLGPQGEKGVMGYPGPPGVPGPIGPLGLPGHVGARGPPGSQG------PKG 182 Query 511 QVGSHGVGGVGGDGGLGGAGGNGGDGG----HGSDG-----GDGGDGGDPGAGGLGGLGG 561 Q GS G G+ G+ G+ GA G GD G HG G G+ G G PG GL G G Sbjct 183 QRGSRGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQGLPGSTG 242 Query 562 DSG----NGTRAASGVDASDHGPG-----SGGNGGNGGNGAQASVAGGAGGNGGDGGNAG 612 D G G R G D GP G G G +G Q G G GD G AG Sbjct 243 DRGLPGEPGLRGLQG----DVGPPGEMGMEGPPGTEGESGLQ-----GEPGAKGDVGTAG 293 Query 613 RVG-DGGAGGNGGDGAAGANGAN-----------SGAPGSDALA--LGQPGGNGGQGDAG 658 VG G G G GA G G G PG D +G PG G G +G Sbjct 294 SVGGTGEPGLRGEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKGEMGLPGIIGPLGRSG 353 Query 659 QAGGAGGAGGAGGSVSGDGGAGGNGGAGGNGGVGASGGAGARGANGIDSIGGTGGAGGGG 718 Q G G G G G G G G G +G +G G+RG G IG +G G G Sbjct 354 QTGLPGPEGIVGIP----GQRGRPGKKGDKGQIGPTGEVGSRGPPG--KIGKSGPKGARG 407 Query 719 GDGGAGGVGGHGGDGGVGGAAPSGTVGSHGTGGVGGDGGLGGAGGVGGAGGNGGIGITVG 778 G G +G G DG G G G G G GL G G G G + Sbjct 408 TRGAVGHLGLMGPDGE------PGIPGYRGHQGQPGPSGLPGPKGEKGYPGEDSTVLGPP 461 Query 779 GAGGAGGNGGDPGAGGRGGLGGDSGNGTSAANGVDASKHGPLTGGDGGVGGNGAKAAA-A 837 G G G GD G RG G + G G VG G + A Sbjct 462 GPRGEPGPVGD--QGERGEPGAE--------------------GYKGHVGVPGLRGATGQ 499 Query 838 GGDGGQGGDGGNAGLFGDGGAGGDGADGTAAEALGGDGGAGGAGGKGGDAGDIGDGGDGG 897 G G+ GD G GL G+ G+ G+ G GA G GK G G G G Sbjct 500 QGPPGEPGDQGEQGLKGERGSEGNK----------GKKGAPGPSGKPGIPG--LQGLLGP 547 Query 898 KGGDGAHGA-----------------LGGLTVAGGNGGAGGAGGAGGAGGAFLGDGGNGG 940 KG G HGA L G+ G G GA G G G+ G G Sbjct 548 KGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGS---SGLPGS 604 Query 941 AGGQGGAGRGGSPGGGG--GVGGHGGAGGDAGMNGGGGTGGQGGNGAAGGAGWSPDSDLK 998 G QG G G PG G G GH GA GD G G G GQ G G L Sbjct 605 PGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKGQPGEYGVQG--------LT 656 Query 999 GFDGFDGGSGGAGGDGGAGGAGGTQTGDGGDGGAGGLGGAGGVGGNGVDGFDINETTGRD 1058 GF GF G G GD G G G + G G G LG G +G TGR Sbjct 657 GFQGFPGPKG-PEGDAGIVGISGPKGPIGHRGNTGPLGREGIIG-----------PTGRT 704 Query 1059 GGDGGDG 1065 G G G Sbjct 705 GPRGEKG 711 Score = 40.8 bits (94), Expect = 0.046, Method: Compositional matrix adjust. Identities = 192/571 (34%), Positives = 220/571 (39%), Gaps = 116/571 (20%) Query 251 GAGGAPG-NGGSGGRGDMAFKDGDGGAGGDGGDPGAGGKGGAGGAGATEGVTGATGATVH 309 GA G PG G G RG G G G+ G GA G+ G G G+ G TG Sbjct 170 GARGPPGSQGPKGQRGS----RGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTG---- 221 Query 310 SGGNGGKGGNGADATVAGANGGKGGAGGNGGLVGDGGAGGDGGSGAAGANGANVGEDGAD 369 N G+ G G GL G G+ GD G Sbjct 222 -------------------NPGERGFQGKPGLQGLPGSTGDRG----------------- 245 Query 370 GTLSGQPGEGSEANGGQGGVGGGGAGGAGGDGGA-GSSALGSGGNGGRGDAGQAGGAGGA 428 L G+PG G QG VG G G G G G S L G G +GD G AG GG Sbjct 246 --LPGEPG----LRGLQGDVGPPGEMGMEGPPGTEGESGL-QGEPGAKGDVGTAGSVGGT 298 Query 429 GGAGGAGGSVSGDGGPGGKGGAGGAGGAGASGGGGGKGASGADSAE-------AVGGAGG 481 G G G PG G G G G G GG+G G D + +G G Sbjct 299 GEPGLR-------GEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKGEMGLPGIIGPLGR 351 Query 482 ------KGGDGGVGGVGGDGGPGGDGGAGGAAPAGQVGSHGVGGVGGDGGLGGAGGNGGD 535 G +G VG G G PG G G P G+VGS G G G G GA G G Sbjct 352 SGQTGLPGPEGIVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIGKSGPKGARGTRGA 411 Query 536 GGHGSDGGDGGDGGDPGAGGLGGLGGDSGNGTRAASGVDASDHGPGSGGNGGNGGNGAQA 595 GH G G G+PG G G G G SG+ PG G G G + Sbjct 412 VGH---LGLMGPDGEPGIPGYRGHQGQPG-----PSGL------PGPKGEKGYPGEDSTV 457 Query 596 SVAGGAGGNGGDGGNAGRVGDGGAGGNGGD-GAAGANGA--NSGAPGSDALALGQPGGNG 652 G G G G+ G G+ GA G G G G GA G P G+PG G Sbjct 458 LGPPGPRGEPGPVGDQGERGEPGAEGYKGHVGVPGLRGATGQQGPP-------GEPGDQG 510 Query 653 GQGDAGQAGGAGGAGGAGGSVSGDGGAGGNGGAGGNGGVGASGGAGARGANGID----SI 708 QG G+ G G G G G +G G G G +G G G GA+GI I Sbjct 511 EQGLKGERGSEGNKGKKGAP----GPSGKPGIPGLQGLLGPKGIQGYHGADGISGNPGKI 566 Query 709 GGTGGAGGGGGDGGAG--GVGGHGGDGGVGGAAPSGTVGSHGTGGVGGDGGLGGAGGVGG 766 G G G G GG G G+ G G GV G+ SG GS G G G+ GL G G+ G Sbjct 567 GPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGS--SGLPGSPGIQGPKGEQGLPGQPGIQG 624 Query 767 AGGNGGIGITVGGAGGAGGNGGDPGAGGRGG 797 G+ GA G G GDPG G+ G Sbjct 625 KRGH-------RGAQGDQGPCGDPGLKGQPG 648 Lambda K H a alpha 0.305 0.144 0.451 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 90217048950 Database: GCF_000001405.40_GRCh38.p14_protein.faa Posted date: Apr 24, 2023 10:59 AM Number of letters in database: 94,334,868 Number of sequences in database: 136,193 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40